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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45290594_45291033_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45290594 - 45291033
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TGTTTCTTGACA
Flanking Amino Acid:
YTLIFDNTFSRFISKRVFYH
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
73
0.57
1.2
74
41.2
Major PPT
79.7
0.67
1
76.3
37.8
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
79.3
0.92
1
82.87
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020023
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025041
45287744 - 45291881
4138