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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45310752_45311120_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45310752 - 45311120
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GTGTGCTTATAT
Flanking Amino Acid:
MAELGLNEHHQ
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79.3
0.66
0.9
73
37.4
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
49
0.01
2.1
69.91
46.5

Associated Gene:

Gene:
LZTFL1
Ensembl Gene ID:
ENSAPLG00000010689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011150
45304384 - 45319046
14663