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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45311935_45312430_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45311935 - 45312430
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAACTATA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TAGTAAATAAAT
Flanking Amino Acid:
LQTDISELENRELLEQVAEF
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
78.4
37.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
80.3
0.68
1
79.2
38.4
Minor 5ss
45.3
-0.5
2.6
60.7
43.8
Minor BPS
45.4
-0.2
2.1
66.4
43

Associated Gene:

Gene:
LZTFL1
Ensembl Gene ID:
ENSAPLG00000010689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011150
45304384 - 45319046
14663