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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45312492_45313007_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45312492 - 45313007
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTTT
5'SS Class:
major
3'SS Sequence:
ATTATTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AATTTTTTAACA
Flanking Amino Acid:
KSEFTSSNKKPSADLIKPKL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
72.8
39.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.3
0.75
0.8
81.8
35.1
Minor 5ss
40.6
-1
3.8
63.6
48.1
Minor BPS
76.8
0.84
1
78.45
31.2

Associated Gene:

Gene:
LZTFL1
Ensembl Gene ID:
ENSAPLG00000010689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011150
45304384 - 45319046
14663