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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45314874_45317513_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45314874 - 45317513
Intron Length:
2640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCATTTAACA
Flanking Amino Acid:
DLQMIQGDQKTNVNKDITEL
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
1
82.5
26.5
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
65.8
0.49
1.5
73.8
37.7

Associated Gene:

Gene:
LZTFL1
Ensembl Gene ID:
ENSAPLG00000010689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011150
45304384 - 45319046
14663