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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45317688_45318167_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45317688 - 45318167
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCATT
5'SS Class:
major
3'SS Sequence:
TATTATCACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAATATTCAAAT
Flanking Amino Acid:
LQDQLSTAEKELEKKFQQTA
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
73.9
42.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68
0.41
0.9
63.4
37.8
Minor 5ss
40.3
-1.1
3.2
57.7
46.7
Minor BPS
49.6
0.05
1.8
69.18
40.9

Associated Gene:

Gene:
LZTFL1
Ensembl Gene ID:
ENSAPLG00000010689
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011150
45304384 - 45319046
14663