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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45330348_45330790_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45330348 - 45330790
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAG
U12 Branch Point Sequence:
TACAGCTTCACA
Flanking Amino Acid:
NGLIYMFTPKLEQLSNPKTW
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
53.7
0.09
1.5
69
38.9
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
47.6
-0.2
2.2
60.95
44.9

Associated Gene:

Gene:
SLC6A20
Ensembl Gene ID:
ENSAPLG00000010906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011418
45327808 - 45334206
6399