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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45331033_45331866_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45331033 - 45331866
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TCGTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AGAAACTAAATC
Flanking Amino Acid:
ATFNYESCINRVILLLLNAF
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
69.9
0.45
0.9
61.4
40.1
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
46.1
-0.3
1.8
52.51
38.3

Associated Gene:

Gene:
SLC6A20
Ensembl Gene ID:
ENSAPLG00000010906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011418
45327808 - 45334206
6399