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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45332428_45332625_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45332428 - 45332625
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GCTCTCTCCACG
Flanking Amino Acid:
ASRFPKEVISGVVCFVNCII
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
74.5
0.55
0.8
69.7
29.9
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
44.8
-0.5
2
49.3
44.3

Associated Gene:

Gene:
SLC6A20
Ensembl Gene ID:
ENSAPLG00000010906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011418
45327808 - 45334206
6399