About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45332786_45332975_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45332786 - 45332975
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTAAAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
IAVCYIYGLRRFEKDLHTMI
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
66
0.36
1
59.2
39.7
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
SLC6A20
Ensembl Gene ID:
ENSAPLG00000010906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011418
45327808 - 45334206
6399