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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45333142_45334056_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45333142 - 45334056
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCAAA
U12 Branch Point Sequence:
ACAGCCCCAAGG
Flanking Amino Acid:
LQYQAWDATQGQLVTKDYPG
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71
35.5
Major BPS
47
-0.1
1.1
52.3
30.3
Major PPT
82.6
0.73
0.7
76.6
25.4
Minor 5ss
36.6
-1.5
3.1
46.6
48.7
Minor BPS
39
-0.9
2.1
39.45
43.8

Associated Gene:

Gene:
SLC6A20
Ensembl Gene ID:
ENSAPLG00000010906
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011418
45327808 - 45334206
6399