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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45339792_45339950_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45339792 - 45339950
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTAATTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCCTTCCTAATT
Flanking Amino Acid:
MKLVRFLMKLSHET
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.5
38.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
69.5
0.44
1
65.3
39.9
Minor 5ss
30.3
-2.3
3.3
38
46.8
Minor BPS
55.5
0.25
1.7
68.49
42.9

Associated Gene:

Gene:
SNRPD1
Ensembl Gene ID:
ENSAPLG00000012256
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012753
45335479 - 45339964
4486