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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45343950_45344037_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45343950 - 45344037
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGGGTTTTAACT
Flanking Amino Acid:
KNNFSDGFRQDAIDLFLGNY
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
77.7
33.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.9
0.81
0.8
77.4
36.9
Minor 5ss
41.3
-1
2.8
49.5
41.1
Minor BPS
65.7
0.57
1.4
75.57
41.7

Associated Gene:

Gene:
SACM1L
Ensembl Gene ID:
ENSAPLG00000012273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030827
45341800 - 45361092
19293
ENSAPLT00000012831
45342237 - 45362819
20583