About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45347850_45349079_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45347850 - 45349079
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTGAG
5'SS Class:
major
3'SS Sequence:
TTTCTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTCTCTGAACA
Flanking Amino Acid:
MVNSMANGMVKYIAFDFHKE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.2
39.8
Major BPS
70
0.5
1
67
39.8
Major PPT
76.2
0.59
1
73.4
35.8
Minor 5ss
32.7
-2
3.4
39.6
40.7
Minor BPS
72.2
0.69
1.4
81.77
32.6

Associated Gene:

Gene:
SACM1L
Ensembl Gene ID:
ENSAPLG00000012273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030827
45341800 - 45361092
19293
ENSAPLT00000012831
45342237 - 45362819
20583