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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45349833_45350033_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45349833 - 45350033
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTGTTTAAAG
Flanking Amino Acid:
YKGSKASFVQTRGSIPFFWS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.4
0.91
0.7
88.7
27.9
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
56.7
0.07
1.9
65.2
42.6

Associated Gene:

Gene:
SACM1L
Ensembl Gene ID:
ENSAPLG00000012273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030827
45341800 - 45361092
19293
ENSAPLT00000012831
45342237 - 45362819
20583