Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45350120_45350857_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45350120 - 45350857

Intron Length:

738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAATAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTTAAT

U12 Branch Point Sequence:

TTTCTCCTACTT

Flanking Amino Acid:

FRAGVRYYVRGIDSEGHAAN

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.3

28.1

Major BPS

66.6

0.41

1.4

69.7

44.2

Major PPT

74.1

0.54

0.8

73.9

Minor 5ss

36.6

-1.5

3.1

46.9

48.4

Minor BPS

52.2

0.15

1.9

77.59

39.1

Associated Gene:

Gene:

SACM1L

Ensembl Gene ID:

ENSAPLG00000012273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030827

45341800 - 45361092

19293

ENSAPLT00000012831

45342237 - 45362819

20583