Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45350960_45353406_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

45350960 - 45353406

Intron Length:

2447

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

TGATATTCATCAG|T

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TTTTCCTTATTG

Flanking Amino Acid:

HRFATPVMHGFITMHSCSIN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.3

64.4

42.3

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

69.3

0.43

67.5

43.1

Minor 5ss

98.3

1.62

0.6

94.6

16.9

Minor BPS

74.6

0.63

1.6

79.24

37.7

Associated Gene:

Gene:

SACM1L

Ensembl Gene ID:

ENSAPLG00000012273

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030827

45341800 - 45361092

19293

ENSAPLT00000012831

45342237 - 45362819

20583