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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45353441_45354867_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45353441 - 45354867
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACCCT
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAAACACA
Flanking Amino Acid:
LLREFAAQPEIHRFATPVMH
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
68.7
42.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
39.9
-1.1
3.2
57.5
46.7
Minor BPS
39.7
-0.8
2.5
62.55
43.1

Associated Gene:

Gene:
SACM1L
Ensembl Gene ID:
ENSAPLG00000012273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030827
45341800 - 45361092
19293
ENSAPLT00000012831
45342237 - 45362819
20583