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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45361093_45362721_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
45361093 - 45362721
Intron Length:
1629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCCC
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTTCTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
62.8
41.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
34.5
-1.8
3
46.1
41.9
Minor BPS
59.3
0.37
1.6
78.88
37.7

Associated Gene:

Gene:
SACM1L
Ensembl Gene ID:
ENSAPLG00000012273
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012831
45342237 - 45362819
20583
Gene:
Ensembl Gene ID:
ENSAPLG00000019856
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025722
45355982 - 45367223
11242