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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45375597_45376512_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45375597 - 45376512
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTCTAATTAAAT
Flanking Amino Acid:
DYHVECYHCEDCGMELNDED
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
51.6
0.13
1.9
71.49
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043674
45375459 - 45378558
3100