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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45377319_45378439_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45377319 - 45378439
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTGCCTTCAATT
Flanking Amino Acid:
NKIYCVRDYHKVLAPKCAAC
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.1
34.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
34.3
-1.8
3.1
41.3
39
Minor BPS
62.8
0.48
1.5
77.51
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024621
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043674
45375459 - 45378558
3100