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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45413663_45422214_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45413663 - 45422214
Intron Length:
8552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TATGGCTGAATT
Flanking Amino Acid:
APHIASEMWKGLAHMHNKLC
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
81.6
31.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.5
0.87
0.7
80.8
36.5
Minor 5ss
45.5
-0.5
2.5
60.1
44.4
Minor BPS
52.7
0.16
2
73.86
43.2

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000032347
45407854 - 45522521
114668
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000039910
45411865 - 45522483
110619