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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45422327_45424558_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45422327 - 45424558
Intron Length:
2232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCACTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
RLMSLSNVLHQAPRPLILHS
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.5
0.71
0.8
82.3
28.5
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000032347
45407854 - 45522521
114668
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523