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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45428933_45437360_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45428933 - 45437360
Intron Length:
8428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTCTTTATCC
Flanking Amino Acid:
FCHDLKMTKHKEPFHKLLVQ
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
75.5
40.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.3
0.5
0.8
70.2
29.5
Minor 5ss
45.5
-0.5
3.1
65.9
39.3
Minor BPS
71.3
0.65
1.5
78.99
36.4

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000032347
45407854 - 45522521
114668
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523