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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45437499_45440274_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45437499 - 45440274
Intron Length:
2776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
LRYTDPHNTDRPFNSDLANY
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000032347
45407854 - 45522521
114668