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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45440374_45443650_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45440374 - 45443650
Intron Length:
3277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTACCTAAAAA
Flanking Amino Acid:
VPEWVNCACPRCKSAARREI
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.5
0.44
1
68
37.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.7
0.02
1.9
60.99
44.9

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523