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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45448157_45451210_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45448157 - 45451210
Intron Length:
3054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
TGTTAGTCAATA
Flanking Amino Acid:
SFENFLDTKIGIPSTSAEDA
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.5
30.7
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
47
-0.2
2.3
65.52
40.9

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032347
45407854 - 45522521
114668
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000032834
45407854 - 45522521
114668