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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45456647_45468533_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45456647 - 45468533
Intron Length:
11887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
ATTTCTTCTATT
Flanking Amino Acid:
WFIKTTAYAKAMFDALSDLP
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
60.3
0.26
1
65.5
28
Major PPT
71.7
0.49
1
70.5
39.9
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
56.8
0.3
1.8
78.23
38.7

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000032347
45407854 - 45522521
114668
ENSAPLT00000045437
45417961 - 45522483
104523
ENSAPLT00000023130
45407486 - 45522521
115036