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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45468678_45471618_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45468678 - 45471618
Intron Length:
2941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTCCCTGATT
Flanking Amino Acid:
FEAGIVYQKEALVNWDPVDQ
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
83
0.74
0.8
81.5
35.9
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
73.9
0.83
1.6
92.15
30.1

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523