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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45471709_45478818_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45471709 - 45478818
Intron Length:
7110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
ALGLSFTWEREITTCLPEYY
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.3
0.79
0.8
80
32
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045437
45417961 - 45522483
104523
ENSAPLT00000039910
45411865 - 45522483
110619
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000013922
45407486 - 45522521
115036