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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45474515_45478818_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45474515 - 45478818
Intron Length:
4304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTTTTACTAATG
Flanking Amino Acid:
ALGLSFTWERDYFCLSRVLC
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.1
0.65
0.8
70.1
35.8
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
49.3
-0.1
2
61.82
40

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032834
45407854 - 45522521
114668