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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45510755_45520259_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45510755 - 45520259
Intron Length:
9505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTTGCTGACA
Flanking Amino Acid:
ARFQKMRGMQVINPMGWDAF
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80
0.68
1
76.5
37.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.8
-0
2.3
74.62
36.9

Associated Gene:

Gene:
LARS2
Ensembl Gene ID:
ENSAPLG00000013338
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032834
45407854 - 45522521
114668
ENSAPLT00000032347
45407854 - 45522521
114668
ENSAPLT00000023130
45407486 - 45522521
115036
ENSAPLT00000045437
45417961 - 45522483
104523
ENSAPLT00000013922
45407486 - 45522521
115036
ENSAPLT00000039910
45411865 - 45522483
110619