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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4554003_4581988_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4554003 - 4581988
Intron Length:
27986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTTTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTTACATGAATT
Flanking Amino Acid:
MLVYPVSQCNISLKK
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.9
33.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
39.3
-1.2
3.3
57.9
46.8
Minor BPS
56.3
0.27
1.8
76.29
39.7

Associated Gene:

Gene:
CTDSPL
Ensembl Gene ID:
ENSAPLG00000030602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010273
4553987 - 4612877
58891