Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45626915_45628319_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45626915 - 45628319

Intron Length:

1405

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGATGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGCATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

TCTCTCTGCATT

Flanking Amino Acid:

YFIMEIQKNIDCVSGPCPFG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

68.6

37.4

Major BPS

0.65

1.1

77.4

37.3

Major PPT

72.2

0.5

0.9

70.2

35.4

Minor 5ss

38.4

-1.3

3.1

47.7

42.5

Minor BPS

48.6

-0

1.9

69.48

41.9

Associated Gene:

Gene:

CDCP1

Ensembl Gene ID:

ENSAPLG00000012011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012495

45626662 - 45643247

16586