About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45635912_45636665_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45635912 - 45636665
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGACAC
5'SS Class:
major
3'SS Sequence:
TCTGTGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GTTTCTGTGATT
Flanking Amino Acid:
HLRITAEKGISCVDLRWCQK
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1
61.5
37.4
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
76.6
0.6
1
69.7
40.3
Minor 5ss
40.1
-1.1
3.1
51.1
39.8
Minor BPS
57.6
0.32
2
79.17
37.6

Associated Gene:

Gene:
CDCP1
Ensembl Gene ID:
ENSAPLG00000012011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012495
45626662 - 45643247
16586