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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45637880_45639132_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45637880 - 45639132
Intron Length:
1253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGTAC
U12 Branch Point Sequence:
TGTTCTTGTACC
Flanking Amino Acid:
FWVTLAEKQIDLAVILAVLA
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.9
32.7
Major BPS
49.7
-0
1.4
52.7
42.9
Major PPT
82.5
0.73
0.9
76.5
37.5
Minor 5ss
37.9
-1.4
2.9
51.5
44.9
Minor BPS
58.5
0.25
1.8
72.29
38.6

Associated Gene:

Gene:
CDCP1
Ensembl Gene ID:
ENSAPLG00000012011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012495
45626662 - 45643247
16586