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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45639215_45640417_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45639215 - 45640417
Intron Length:
1203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTCTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
TGTTCCTGACCT
Flanking Amino Acid:
IGLTVCCVKKKKKKSQNPMV
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
64.2
0.32
1
58.2
41.2
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
67.5
0.63
1.8
85.99
39.7

Associated Gene:

Gene:
CDCP1
Ensembl Gene ID:
ENSAPLG00000012011
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012495
45626662 - 45643247
16586