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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45654319_45657755_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45654319 - 45657755
Intron Length:
3437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTCTCCAACA
Flanking Amino Acid:
GRQKPAAAKKDGVSLKMIED
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.8
0.58
0.9
71.1
34
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
58.5
0.26
1.9
75.04
36

Associated Gene:

Gene:
CLEC3B
Ensembl Gene ID:
ENSAPLG00000029228
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034745
45652566 - 45657861
5296