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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45664753_45667710_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45664753 - 45667710
Intron Length:
2958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTTTCTTTACTT
Flanking Amino Acid:
DPESIFEMMETGKRVGKALH
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
74
0.6
1
65.6
41.1
Major PPT
86.4
0.82
0.8
80.7
30.9
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
68.9
0.67
1.6
82.98
39.3

Associated Gene:

Gene:
EXOSC7
Ensembl Gene ID:
ENSAPLG00000012218
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012717
45664648 - 45684259
19612