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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45667050_45667710_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45667050 - 45667710
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCGTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAATACTTAAAG
Flanking Amino Acid:
DPESIFEMMERSRTNFSMAN
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
71.9
0.49
0.8
64.4
36.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
56.4
0.06
1.7
59.03
41.5

Associated Gene:

Gene:
EXOSC7
Ensembl Gene ID:
ENSAPLG00000012218
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030201
45666837 - 45684259
17423