Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45674630_45678802_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45674630 - 45678802

Intron Length:

4173

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGCCTTTTAAAG

Flanking Amino Acid:

HCWVLYVDVLLLECGGNLFD

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

26.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

84.7

0.78

0.7

77.6

31.2

Minor 5ss

35.2

-1.7

2.7

39.2

40.5

Minor BPS

52.3

-0

1.5

54.19

40.9

Associated Gene:

Gene:

EXOSC7

Ensembl Gene ID:

ENSAPLG00000012218

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030201

45666837 - 45684259

17423

ENSAPLT00000012717

45664648 - 45684259

19612