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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45698208_45701327_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45698208 - 45701327
Intron Length:
3120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGTGCTATAAAT
Flanking Amino Acid:
SIKPDRAHHCSVCKRCIRKM
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.5
34.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
86.9
0.83
0.7
84.6
30.3
Minor 5ss
38.7
-1.3
3.4
56.7
47.6
Minor BPS
54.1
0.21
1.8
74.97
41.5

Associated Gene:

Gene:
ZDHHC3
Ensembl Gene ID:
ENSAPLG00000012431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012955
45695102 - 45708026
12925