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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45701425_45703274_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45701425 - 45703274
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTGCCTGATGC
Flanking Amino Acid:
NNQKYFVLFTMYIALISLHA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
73.9
0.59
1
81
30.2
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
48.6
-0.1
2.1
66.94
44.6

Associated Gene:

Gene:
ZDHHC3
Ensembl Gene ID:
ENSAPLG00000012431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012955
45695102 - 45708026
12925