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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45703357_45705156_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45703357 - 45705156
Intron Length:
1800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
FLYCFEEDWTKCSSFSPPTT
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
ZDHHC3
Ensembl Gene ID:
ENSAPLG00000012431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012955
45695102 - 45708026
12925