About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45721104_45721601_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45721104 - 45721601
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGT
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
ATTTTGTGACCC
Flanking Amino Acid:
CWVFSGVLTTVMRCLGIPAR
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.2
40.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
70.2
0.46
0.9
63.5
37
Minor 5ss
30.3
-2.3
3.7
46.8
48.5
Minor BPS
46.2
-0.3
2.3
64.94
40.8

Associated Gene:

Gene:
TGM4
Ensembl Gene ID:
ENSAPLG00000012605
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013157
45716633 - 45728440
11808