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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45723487_45723855_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45723487 - 45723855
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
IYLLFNPWCETDIVFLSNEA
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
67.1
44
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.1
0.9
0.8
92.3
26.6
Minor 5ss
33.4
-1.9
3.2
40
40.1
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
TGM4
Ensembl Gene ID:
ENSAPLG00000012605
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013157
45716633 - 45728440
11808