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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45724308_45724395_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45724308 - 45724395
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
ACCCATGTAACG
Flanking Amino Acid:
SDKLALNFSIGERPMKPLGT
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
42.1
-0.7
2.1
43.5
42.3

Associated Gene:

Gene:
TGM4
Ensembl Gene ID:
ENSAPLG00000012605
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013157
45716633 - 45728440
11808