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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45739971_45740769_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45739971 - 45740769
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
TTTASNFISSAILGKLLFGE
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
83.6
29.8
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
90.5
0.91
0.6
89
20.2
Minor 5ss
35.5
-1.6
2.7
43.1
43.9
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
TMEM42
Ensembl Gene ID:
ENSAPLG00000020576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047385
45739827 - 45741057
1231