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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45747412_45747843_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45747412 - 45747843
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATATGT
5'SS Class:
major
3'SS Sequence:
TTACTAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATTTACTAATT
Flanking Amino Acid:
TYEERDRIGKEMDLLRKQVN
Intron Amino Acid Position:
1332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
70.5
36.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.1
0.61
0.9
70.3
38.9
Minor 5ss
34.3
-1.8
3.1
48.1
47.4
Minor BPS
56.2
0.27
1.9
78.94
36.9

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637