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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45748010_45749664_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45748010 - 45749664
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTATTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCAATATTT
Flanking Amino Acid:
AMEEMLKMKAELEETKNALR
Intron Amino Acid Position:
1276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.7
39.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.9
81.4
35.2
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
53.5
0.19
2.1
82.33
38.9

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637